Table 3 Running time and average SPS with RNA MSA
| Φ RNA (small) | Φ RNA (large) | |||||
|---|---|---|---|---|---|---|
| Time | Memory (GB) | Avg SPS | Time | Memory (GB) | Avg SPS | |
| MUSCLE | 1 h 25 m | ~ 13 | 0.821 | – | – | – |
| MAFFT | 45 m 33 s | ~ 10 | 0.815 | – | – | – |
| Clustal-Omega | 4 h 16 m | ~ 10 | 0.835 | – | – | – |
| HAlign | 1 h 32 s | ~ 2 | 0.631 | 3 h 15 m | ~ 10 | 0.631 |
| HAlign-II | 23 m 34 s | ~ 1 | 0.633 | 59 m 42 s | ~ 2 | 0.633 |